Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX251404: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Pond-221887' containing sample 'Escherichia coli KOEGE 73 (195a)'
2 ILLUMINA (Illumina HiSeq 2000) runs: 4.5M spots, 908.7M bases, 452.1Mb downloads

UUID: 26c8ae2a-b42c-4d79-a21b-cafd519c5bcb

Design: Illumina sequencing of Escherichia coli KOEGE 73 (195a) via random selection

Submitted by: Broad Institute (BI)

Study: E coli UTI Bacteremia

PRJNA186271 • SRP019635 • All experiments • All runs

Sample: Pathogen bacterial, clinical or host-associated sample from Escherichia coli KOEGE 73 (195a)

SAMN01885881 • SRS402266 • All experiments • All runs

Organism: Escherichia coli KOEGE 73 (195a)

Library:

Name: Pond-221887

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 12 attributes...) (hide...)

analysis_type: AssemblyWithReference

gssr_id: 290040.0

library_type: WholeGenomeShotgun

lsid: broadinstitute.org:bsp.prod.sample:3VRO2

material_type: DNA:DNA Somatic

product_order: PDO-291

product_part_number: P-MCV-0001

project: G30246

research_project: RP-192

root_sample_id: SM-2TD3T

sample_id: SM-3VRO2

work_request: 35134

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-03-08 22:34:25.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 2 runs, 4.5M spots, 908.7M bases, 452.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR785810	2,265,499	457.6M	228Mb	2013-03-18
SRR785811	2,233,171	451.1M	224Mb	2013-03-18

ID:: 351328

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